Malicious content in issues or pull requests can trick AI agents in CI/CD workflows into running privileged commands in an ...

Java: The script relies on the PlantUML JAR, which requires a Java Runtime Environment. Tested with OpenJDK 21 and Amazon Corretto 17.

The pipeline's workflow begins with the essential step of quality assessment. All incoming raw sequencing read files (typically in .fastq format) are first processed by FastQC. This tool generates ...